PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6252
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 113aa    MW: 12607.4 Da    PI: 8.3159
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6252genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB148.11.9e-46596394
                     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89
                              e d+ lPianvsrimk+ lP nakisk++k+++qec++efisfvtseasdkc++e+rkt++gdd++wal++lGf++y+e++  yl k
  Tp57577_TGAC_v2_mRNA6252  5 EGDKTLPIANVSRIMKQNLPPNAKISKESKQLMQECATEFISFVTSEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYK 91
                              679************************************************************************************ PP

                     NF-YB 90 yrele 94
                              +r++e
  Tp57577_TGAC_v2_mRNA6252 92 FRQAE 96
                              **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-454108IPR009072Histone-fold
SuperFamilySSF471133.88E-35799IPR009072Histone-fold
PfamPF008083.2E-26973IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-163755No hitNo description
PROSITE patternPS0068504056IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-165674No hitNo description
PRINTSPR006151.2E-167593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MNGGEGDKTL PIANVSRIMK QNLPPNAKIS KESKQLMQEC ATEFISFVTS EASDKCHKEN  60
RKTVSGDDIC WALCSLGFDN YAEAIGRYLY KFRQAELVKL NQNKLETSKD KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-39594392Transcription factor HapC (Eurofung)
4g92_B2e-39594392Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1514261e-103AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.
GenBankAC1612411e-103AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence.
GenBankJQ9182841e-103JQ918284.1 Medicago truncatula nuclear transcription factor Y subunit B11 (NF-YB11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591124.11e-70nuclear transcription factor Y protein
SwissprotO040279e-50NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLG7I8541e-70G7I854_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA10G29440.26e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.15e-51nuclear factor Y, subunit B4